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Microbiology

AssayCore Micro

AssayCore Micro is purpose-built for clinical and environmental microbiology laboratories. The system manages the full culture workflow from sample registration to final identification and antibiotic susceptibility reporting. Full EUCAST v14 and CLSI M100 2024 breakpoint tables enable automated S/I/R interpretation. Expert rules engine detects ESBL, AmpC, CRE/Carbapenemase, MRSA, VRE, and intrinsic resistance phenotypes. Colony counter ML integration, incubation scheduling, and FHIR R4 antibiogram export complete the solution.

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Compliance & Standards

ISO 15189:2022ISO/IEC 17025:2017ISO 11133 (culture media)ISO 11737 (sterilization)ISO 14698 (environmental monitoring)EUCAST v14.0CLSI M100-S34 (2024)CLSI M07 (MIC)EU GMP Annex 1 (2022 revision)USP <71> (sterility)GDPRHIPAA-readyHL7 FHIR R4

Platform Modules

Complete feature set covering every stage of your laboratory workflow.

Culture Management

  • Sample registration with QR code generation
  • Plate journal with batch operations
  • Colony morphology documentation with photo
  • Gram staining classification
  • Organism identification (NCBI 5K+ reference)

AST (Antibiotic Susceptibility)

  • EUCAST v14 full breakpoint database (~3,000 entries)
  • CLSI M100 2024 breakpoints
  • Automated S/I/R interpretation
  • MIC dilution series validation
  • Disk diffusion zone diameter reading

Expert Rules Engine

  • ESBL detection (phenotypic + genotypic flags)
  • AmpC beta-lactamase rules
  • CRE/Carbapenemase detection (OXA, KPC, NDM, VIM)
  • MRSA and borderline oxacillin resistance
  • VRE (vanA, vanB) detection

Incubation & Workflow

  • Incubation scheduler with temperature zone assignment
  • Automated reading reminders and alerts
  • Culture media QC per strain
  • Environmental monitoring module
  • SanBak hygiene workflow

Reporting

  • Antibiogram report PDF (Thymeleaf)
  • Cumulative antibiogram (CLSI M39)
  • FHIR R4 DiagnosticReport export
  • Infection control trend reports
  • Resistance pattern surveillance

AI/ML Integration

  • Colony counter CV model (YOLOv8-based)
  • AST predictor with confidence scoring
  • Resistance phenotype probability
  • Anomaly detection on growth curves
  • Gram stain classification assist

Who Uses AssayCore Micro?

  • Hospital microbiology labs (bacteriology, mycology, virology)
  • Reference microbiology labs with high-volume AST
  • Environmental monitoring labs (pharma, food)
  • Infection control units requiring surveillance reporting

Integrations

EUCASTCLSIFHIR R4KafkaMinIOKeycloak SSO

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